PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.8063s0001.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 247aa    MW: 27305.9 Da    PI: 4.917
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.8063s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.7e-1787135354
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                          y+GVr ++ +g+++AeIrd + ng   r++lg+f+ aeeAa a+++a+ + +
  Araha.8063s0001.1.p  87 YRGVRKRP-WGKFAAEIRDSTRNG--IRVWLGTFDKAEEAALAYDQAAFATK 135
                          9*******.**********44465..*********************98765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.2E-3586150IPR001471AP2/ERF domain
PfamPF008471.9E-1186133IPR001471AP2/ERF domain
PROSITE profilePS5103221.73386144IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-2986145IPR001471AP2/ERF domain
PRINTSPR003674.1E-108798IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-2187146IPR016177DNA-binding domain
CDDcd000181.25E-2887145No hitNo description
PRINTSPR003674.1E-10110126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MEYSQSSMYS SPSSWSSSQE SLLWNESCFL DQSSDPQSFF CPTYAYSDDF FSFESPPEMM  60
SKEEIQNGDV SNSEEEEKIG IDEERSYRGV RKRPWGKFAA EIRDSTRNGI RVWLGTFDKA  120
EEAALAYDQA AFATKGSLAT LNFPVEVVRE SLKKMENVNL HDGGSPVMAL KRKHSLRNRP  180
RGKKRSSSSS SSSSSNSSSS SSSYSSSSSS TSRSSKQSVV KQESGTLVVF EDLGAEYLEQ  240
LLMSSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-2785147163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00286DAPTransfer from AT2G31230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0065930.0AC006593.5 Arabidopsis thaliana chromosome 2 clone F16D14 map nga361, complete sequence.
GenBankAY0704430.0AY070443.1 Arabidopsis thaliana putative ethylene reponse factor AP2 domain transcription factor (At2g31230) mRNA, complete cds.
GenBankAY0965630.0AY096563.1 Arabidopsis thaliana putative ethylene reponse factor AP2 domain transcription factor (At2g31230) mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_850162.11e-135ethylene-responsive transcription factor 15
SwissprotQ8VYM01e-137ERF93_ARATH; Ethylene-responsive transcription factor 15
TrEMBLD7LD071e-135D7LD07_ARALL; Putative uncharacterized protein
STRINGAT2G31230.11e-135(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39901859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.11e-108ethylene-responsive element binding factor 15